Seeking
I am a graduated software engineer completing my Ph.D. as a student contractor for the Department of Defense, through the Science, Mathematics, and Research for Transformation (SMART) scholarship. I am open to part-time/contract, remote work in:
- Intersection of LLMs and structured knowledge
- Graph data and knowledge modeling
- Applied Taxonomy and Ontology research
- Natural language processing research
- Scientific/technical writing, editing and proofreading
- Java and Python software engineering
Refer to my entire skillset below. Feel free to contact me at any time.
Education
Doctorate of Philosophy in Computer Science and Electrical Engineering, On the Provenance of Software Systems: Automatic Software Development Life Cycle Provenance Capture by Leveraging Knowledge Graph and Large Language Model Synergy - 4.0/4.0 GPA, Embry Riddle Aeronautical University (ERAU), Daytona Beach, FL
- Doctoral advisor: Dr. Omar Ochoa
Master of Science in Software Engineering, Towards Agile Academia: An Approach to Scientific Paper Writing Inspired by Software Engineering, ERAU Daytona
Bachelor of Science in Software Engineering, Minor in Cybersecurity Engineering - 3.93/4.0 GPA, ERAU Daytona
Associate in Arts - 4.0/4.0 GPA with high honors, Florida State College at Jacksonville
High School Diploma - 3.0/3.0 GPA as salutatorian, Trinity Christian Academy, Jacksonville, FL
Awards
Top 3% Downloaded Author, Social Science Research Network (SSRN)
Outstanding Doctoral Student, Electrical Engineering and Computer Science, Embry-Riddle Aeronautical University
Science, Mathematics, and Research for Transformation (SMART) Scholarship - Department of Defense, Sponsored through the Air Force Research Lab (AFRL), Rome, NY
- Consistent summer research work with the nation's top information analysts, artificial intelligence experts and data visualization scientists at the Information Directorate of the AFRL
- Mentorship by some of the nation's leading Semantic Web and Linked Data experts, including Dr. Nicholas Del Rio and Dr. Timothy Lebo
- Full tuition payment, annual stipend, internships and continued work after graduation
Diamond Eagle Scholarship, Embry-Riddle Aeronautical University
- Highest-obtainable scholarship for new ERAU students
The Florida Bright Future Scholarship - Academic Scholar Award, FSCJ & TCA
Publications
Awaiting Publication
(Secondary author): Creating Robust Data Sets for AI by Leveraging Ontological Structures, primary author Lynn Vonderhaar - ICSC 2025
(Secondary author): Exploring Testing Methods for Large Language Models, primary author Timothy Elvira - ICMLA 2024
(Primary author): Graph Retrieval-Augmented Generation for Large Language Models: A Survey - TransAI AIxSET
(Tertiary author): A Survey on the Intersection of Language Models and Knowledge Graphs, primary author Timothy Elvira - SSRN
Published
(Tertiary Author): The Role, Needs, and State of Cognitive Assistants in Single Pilot Operations, primary author Alexandra Davidoff - AIAA - Journal of Aerospace Information Systems
(Primary author): Leveraging Linked Data for Knowledge Management: A Proposal for the Aerospace Industry - AIAA - Journal of Aerospace Information Systems
(Tertiary author): Towards Robust Training Datasets for Machine Learning with Ontologies: A Case Study for Emergency Road Vehicle Detection, primary author Lynn Vonderhaar - arXiv
(Primary author): Semantic Science: Publication Beyond the PDF - IEEE SoutheastCon
(Primary author): Dawn of the Dialogue: AI's Leap from Lab to Living Room - Frontiers in Artificial Intelligence
(Primary Author): Towards Agile Academia: An Approach to Scientific Paper Writing Inspired by Software Engineering - Embry-Riddle Aeronautical University Scholarly Commons
(Tertiary author): Scrum in the Classroom: An Implementation Guide, primary author Sarah Reynolds - 2023 IEEE Frontiers in Education (FIE) Conference
(Tertiary author): Leveraging Signal Strength as a Mechanism to Secure GPS Messages, primary author Juan Couder - 2023 IEEE/AIAA 42nd Digital Avionics Systems Conference (DASC)
(Primary Author): GPT-4: A Stochastic Parrot or Ontological Craftsman? Discovering Implicit Knowledge Structures in Large Language Models - 2023 Fifth International Conference on Transdisciplinary AI (TransAI)
(Primary Author): Automatic Generation of BFO-Compliant Aristotelian Definitions in OWL Ontologies with GPT - 2023 Fifth International Conference on Transdisciplinary AI (TransAI)
(Tertiary author): Impacts of Catastrophic Forgetting: From a Machine Learning Engineering Perspective, primary author Timothy Elvira - 2023 Congress in Computer Science, Computer Engineering, & Applied Computing (CSCE)
(Secondary author): Digital Rubber Duck: Leveraging Large Language Models for Extreme Programming, primary author Timothy Elvira - 2023 Congress in Computer Science, Computer Engineering, & Applied Computing (CSCE)
(Primary author): Microelectronic Technology, AI and Academic Dishonesty: An Agile Engineering Approach - American Society for Engineering Education (TELPhE) 2023
(Primary author): The Influence of Interpersonal Chemistry on Learning in Agile Software Engineering Education - SSRN
(Tertiary author): Validating Security Requirement Specifications through the use of a Knowledge Graph, primary author Sarah Reynolds - 2023 IEEE 18th International Conference on Semantic Computing (ICSC)
(Primary Author): An Exploration of Explainable Machine Learning Using Semantic Web Technology - 2022 IEEE 16th International Conference on Semantic Computing (ICSC)
(Contributor in grammar, structure and spelling revision): Supporting Security Requirements Engineering through the Development of the Secure Development Ontology - 2022 IEEE 16th International Conference on Semantic Computing (ICSC 2022), primary author Jessica Steinmann
(Contributor): Incorporating a Virtual Reality Environment in the Teaching of Analysis of Software Requirements - 2019 IEEE Frontiers in Education Conference (FIE 2019), primary author Omar Ochoa
In Progress
(Secondary Author): Towards A Taxonomy of ML Misbehaviors and their Software Engineering Solutions, primary author Timothy Elvira
(Primary author): Knowledge Graph Relationship Inferencing using ADE20k Images, Geospatial Bounding Boxes and the Suggested Upper Merged Ontology
(Primary author): The Software Development Life Cycle and Ontology Engineering: Defining a Structured Process for Ontology Development
(Tertiary author): Navigating the Future of Aviation: The Role, Needs, and State of Cognitive Assistants in Single Pilot Operations, primary author Alexandra Davidoff
Colleague Theses
(Contributor in technical elements): Eliminating Security Weaknesses in Requirement Specifications via a Knowledge Graph, primary author Lynn Vonder Haar, ERAU
(Contributor in technical elements): Extracting a Body of Knowledge as a First Step Towards Defining a United Software Engineering Curriculum Guideline, primary author Anton Kiselev, ERAU
Competition Proposals
(Secondary author): Expanding the Capabilities of the NAS through AI: A White Box for the Airspace Ecosystem, top 10 finalist, faculty advisor Omar Ochoa
Grant Proposals
(Contributor in grammar, structure and spelling revision): Expanding the Nation’s STEM Talent Pool by Accelerating Graduate Degree Completion in Computer, Software, and Cybersecurity Engineering – NSF Award Number 2221602 amounting to $1,499,354 over the period 10/01/2022 – 09/30/2027, principal investigator Omar Ochoa, ERAU
Articles
(Contributor in grammar, structure and spelling revision): Synthetic Ontologies: A Hypothesis, primary author Alexander Bikeyev
Professional
Freelance / Contract
Reasoning Consultant - Upwork
- Consulted with a client on FOL/HOL ontology reasoning
Ontology Engineer - Upwork
- Developed a mid-level ontology for a discreet domain
- Provided stakeholder-level documentation on OWL reasoning and description logics
Nuclear Construction Ontology Engineer - Upwork
- Consulted on, and developed, an ontology to be used for nuclear facility construction process evaluation
BFO/CCO Consultant and Ontology Engineer - Quiet Professionals
- Engaged in consultation and project work
Ontologist and Linked Data Engineer - Hooray Media
- Consulted on an ontology to be integrated with a WordPress ecosystem for a local content publishing company
- Developed a Linked Data taxonomy for web post content
Ontologist and Knowledge Graph Engineer - The Link
- Consulted on an ontology for the construction industry
- Engineered a system for knowledge graph extraction from construction documents
- Maintained an ecosystem of knowledge graphs containing over 10,000 nodes and 50,000 relations
Legal Ontology Consultant - Upwork
- Provided insight on the design and development of a legal domain ontology in OWL
Software Test Engineer - Upwork
- Tested and gave feedback for a startup scientific research platform
Geospatial Ontology Analyst - Upwork
- Queried a large geospatial ontology with complex SPARQL
- Diagnosed and fixed issues with OWL and SWRL reasoning
- Produced visualizations in GraphDB and Stardog
Knowledge Graph Engineer - Upwork
- Represented a specific use case for the SDLC in GraphDB using PROV and SEON
Technology Consultant and Scientific Writer - ForumAPI
- Provided insight on automated documentation techniques and created artifacts related to scientific publication on a particular domain for a client startup company
- Worked with the GPT API suite to generate software-related documents
- Wrote and published several scientific papers
Ontologist - WordLift SEO (international remote)
- Acted as a knowledge representation consultant
- Represented a client domain using Schema.org and GS1, in OWL, SWRL and SHACL
Graduate Positions
University Course Engineer - The Knowledge Representation Spectrum
- Developed a course intended to be an extension to a relational databases course, covering the history of knowledge representation, focusing on applied ontology, Linked Data and contemporary NLP
Group Researcher and Semantic Web Consultant, ERAU Daytona, team lead Omar Ochoa
- Worked on projects related to ML, NLP, Linked Data and cybersecurity; produced many papers
- Performed work with other researchers, in addition to contributing to and writing papers on a multitude of research topics, most of which centered around Semantic technology
- Acted as Semantic Web consultant for various other student researchers, in addition to providing assistance in paper review and revision
Paid Internships
SMART Scholar Research Intern - ML Provenance, AFRL, Rome, NY
- Advanced dissertation research with real-world data
- Annotated ML platform images in CVAT
SMART Scholar Research Intern - Computer Vision Schema in JSON-LD, AFRL, Rome, NY
- Curated multiple military documents and produced a proto-ontology in JSON-LD for recording the provenance of computer vision tasks
SMART Scholar Research Intern - Machine Learning Interoperability with Basic Formal Ontology (BFO), AFRL, Rome, NY
- Represented the domain of machine learning and defense operations using the Basic Formal Ontology (of Barry Smith) and the Common Core Ontologies
- Mapped several disparate ontology terms from an ad-hoc ML ontology into BFO/CCO compliance
- The produced ontology allowed the answering of core competency questions useful for subject matter experts
- Gained familiarity with SNOMED-CT and the OBO ontologies
SMART Scholar Remote Research Intern - Geospatial Relationship Inferencing, AFRL, Rome, NY
- Worked remotely due to COVID-19; produced new geospatial relationships between suggested upper merged ontology (SUMO) objects linked with ADE20K annotations and WKTs
AFRL Scholars Remote Research Intern - ML Explainability, AFRL, Rome, NY
- Worked remotely due to COVID-19 and managed to produce “explanations” for machine learning, using background semantic knowledge and the DL-Learner framework
AFRL Scholars Research Intern - ML-Boosted Knowledge Graphs, AFRL, Rome, NY
- Worked with others in “boosting” semantic graphs through machine learning
- Modelled topics from ontologies and eventually assessed ontology quality through metrics
- Produced multitudes of relevant data for the Air Force, as well as a basic ontology quality assessment framework
Undergrad and Prior
Grader for CS344 - C Programming and UNIX, ERAU Daytona
- Assessed content included Linux commands and intermediate C programming topics, such as structures, complex pointer manipulation and memory management
Grader for CS315 - Data Structures and Algorithms, ERAU Daytona
- Evaluated implementation of linked lists, queues, stacks, trees, heaps, maps, graphs, recursion, sorting and searching algorithms
Customer Service Clerk, Publix Supermarkets
- Assisted customers and managed merchandise loading
Projects
Linked Data Consultant and Scientific Writer - Cloudcell
- Researched and prepared a biomedical scientific paper to be published
Stable Diffusion and Low-Rank Adaptation Testing - 1 member
- Used the SD WebUI, a variety of models, LoRAs and VAES, along with prompting techniques, to generate images
- An investigation into the toolset for the purpose of future work on generating synthetic data for military vision models
An Investigation into Computational Efficiency Optimization of Natural Language Processing Vectorization Techniques on Large Corpora in Python - 1 member
- Used Numpy, Numba, Numexpr, Cython, parallel Cython and MPI to improve the computational efficiency of basic vectorization algorithms for NLP (e.g., TF-IDF and Naïve Bayes)
BFO Buddy - 1 member
- A command-line Python tool for bootstrapping ontology development with BFO
USA Obesity Rates Visualization and Analysis - 4 members
- A Pandas/Tableau visualization incorporating dozens of datasets with thousands of data points taken from public US Census datasets; analysis on obesity by region, age group, food quality and various other factors
- Additionally, curated statistics on the World's Strongest Man competitors and performed analysis on their capabilities
Upper Martial Arts Ontology (UMAO) - 1 member
- Represented the domain of martial arts using Schema.org as the base taxonomy, and Bruce Lee's Jeet Kune Do book as the lexicon
Volusia County Parcel Elevation Visualization with SQL and QGIS - 1 member
- A QGIS visualization utilizing several public shape files to display the approximate sea-level elevation of all parcels in Volusia County Florida
- Used several complex GIS functions to perform contour line elevation calculations and QGIS to visualize it
BitTorrent Systems Engineering Management Plan - 1 member
- Produced an entire systems plan for the BitTorrent protocol and application, as a case study
Microsoft Word Usability Desiderata - 1 member
- Evaluated the usability of Microsoft Word's UX using the System Usability Scale and the Nielsen-Norman 5-point Likert scale
- Developed UX personas and validated their accuracy with three empirical studies on personal contacts, using a systematized test plan
EcoCar - 6 teams, 6 members each
- Assisted Embry-Riddle's EcoCar team with the car's autopilot function
- Was a member of the "core" team responsible for all system documentation, including user stories, requirements documents, Kanban board management, design documents and test plans
Meme Ontology and Clustering Analysis - 3 members
- Scraped the website knowyourmeme.com and derived a taxonomy for memes
- Populated this taxonomy with over ten thousand memes and performed cluster analysis to find meme categories
Network Attached Storage (NAS) Server - 1 member
- Built a personal NAS server with 16TB of hard drive space in RAID-1
- Populated personal data, practiced standardized data naming conventions, organizational principles, governance techniques and security measures on a LAN
Ludum Dare 44 - 2 members
- Produced a game in a 48 hour game jam
- Placed top 3% globally
- Responsible for all art and music
ARocket - 4 members
- Produced an augmented reality application for Android phones using Unity and C# for the 2019 Hackathon at ERAU Daytona, winning 3rd place
- The application allowed the user to create and launch a rocket in a virtual-physical space, in addition to refueling and landing the craft
- Sourced and created all the audio and visual media for the application, in addition to implementing some physics
VxWorks C Water Heater Simulation - 1 member
- Simulated the real-time system of a water heater in VxWorks C, utilizing complex techniques with semaphores, watchdogs and various other multithreading concepts
Encrypted Text Messages Transmitted Via Near-Field Sound - 3 members
- Used the Chirp library of Python to produce a phone app that could transmit encrypted messages over proximal sound with public key encryption
LAN Multiplayer Board Game - 1 member
- A 2D board game similar to Tic-Tac-Toe
- Strict model-view separation and multithreading was implemented
- Connectivity via LAN with the separate codebase of other students using a common interface of serialized classes and TCP sockets
Monster Hunter: World Player Support Project (MHW:PSP) - 2 members
- Created a Java/MySQL application for players of the game Monster Hunter: World
- Populated 22 tables with over 1500 game-accurate entries
- Developed MySQL schema using PHPMyAdmin, connected the Java code to the database using JDBC, designed and created the user interface (UI) and all functionality
EagleListings - 5 members
- Created a Java/MySQL application for sales between students of ERAU Daytona
- Implemented the database interface using JDBC, designed and created the UI
- Acted as the SCRUM master for the team
Tiles - 1 member
- Created a fast-paced clicker game in Java
Text-Based Racing Game - 1 member
- Created a text-based, console racing game supporting up to four players in C
Boe-Bot Line Follower Robot - 3 members
- Built and programmed an Arduino robot to follow lines and respond to the position of various colored objects
Talks
Podcasts
Powering AI with Ontology in Construction, Constructed Futures with Hugh Seaton
Govt Clearances
Current Clearance Status
I am cleared for Secret T3 but do not continually retain an explicit clearance.
Past Clearances
Confidential, cleared by DCSA, retained by USRA
Confidential, cleared by DCSA, retained by USRA
Secret, cleared by DCSA, retained by USRA
Certificates
Security+, CompTIA
Semantic Web Technologies, Hasso Plattner Institute
Machine Learning, Upwork
Machine Learning Specialization, Stanford DeepLearning.AI
MLOps Essentials: Model Deployment and Monitoring, LinkedIn Learning
MLOps Essentials: Model Development and Integration, LinkedIn Learning
How to Research and Write Using Generative AI Tools, LinkedIn Learning
GPT-4: The New GPT Release, LinkedIn Learning
Prompt Engineering: How to Talk to the AIs, LinkedIn Learning
Remote Work Professional, CertiProf
Data Analytics Professional, Google
Essential Editing and Proofreading, Virtued Academy International (IAOTH)
Extracurriculars
Scholarly
Reviewer - Discover Artificial Intelligence, Springer
Reviewer - 2024 IEEE ASEE Frontiers in Education (FIE)
Participated in public review of the SWEBOK v4 guide
Contributor to the DAIR Prompt Engineering Guide
Contributor to the OntoGPT Github
Contributor to the Huge AI Models Github
Reviewer - 2023 IEEE ASEE Frontiers in Education (FIE)
Contributor to Practical Natural Language Processing (Vajalla et al.) errata
Contributor to the Common Core Ontologies
- Provided clarification of term definitions and term spelling in the official Common Core Ontologies Github repository
Contributor to the Semantalytics Awesome Semantic Web list
Created a summarized list of BFO and BFO-related resources for other researchers
Organizations
IEEE - Member (#98174383)
American Society for Engineering Education - Member
White Hat Eagles Cybersecurity Club (WHECS) - Member
- Learned the principles of cybersecurity through weekly lectures taught from the CompTIA Security+ book
- Engaged in several hands-on activities dealing with hacking
Embry-Riddle Artificial Intelligence Club - Member
- Worked with genetic algorithms in a variety of scenarios
Volunteer
Audio/Visual Technician, River Road Baptist Church, Hilliard, FL
- Ensured A/V quality for worship and sermon services using ProPresenter, vMix, StageMix and MonitorMix for an in-person audience of ~100 and a livestream audience of ~10
Personal Computer Construction Consultant, Remote/In-Person
- Assisted personal contacts with computer construction and computer setup
- Resolved computer, network, software and peripheral issues
All-rounder, Nassau County Public Library
- Labeling and returning books, assisting customers; periodic maintenance of the library database software
Shrimp Fest Worker, Prince of Peace Lutheran Church
- Preparing food, cashiering and assisting customers
Class Ambassador, Hugh O'Brian Youth Leadership Program
- Selected as one out of 200+ students to represent my high-school in a leadership summit
- Learned effective interpersonal relational, communication and leadership skills
Standards
Proficient
Not precisely a standard, but used in software engineering as a common reference manual; the subject of a lot of my work over the years
Familiar
Parsed the entirety of MasterFormat and SectionFormat and built knowledge graphs for them
"SDLC standard", familiar with the concepts and applications
Familiar with the concepts and implementation of bibliographic referencing
Acquainted
Know the standard and have read it
Have studied and parsed the document in an earlier project
Courses
Engineering Physics I, II & III
Introduction to Engineering
Scientific Programming in C
Introduction to Discrete Structures
Technical Report Writing
Computer Science II (Java)
Digital Circuit Design
Principles of Aeronautical Science
Software Engineering Practices
Introduction to Scientific Computing
Data Structures Analysis and Algorithms
Analysis and Design of Software Systems
Probability and Statistics
Files and Database Systems
Microprocessor Systems
Software Construction
Engineering Economics
Organization of Programming Languages
Computer Architecture
Software Modeling
Applied Cryptography
Network Security
Real-Time Systems
Human Factors I: Principles and Fundamentals
Digital Forensics
Operating Systems
Software Quality Engineering and Assurance
Software Capstone Projects I & II
Human Factors and System Safety
Human-Computer Interaction
Fundamentals of Systems Engineering
Software System Architecture and Design
Software Requirements Engineering
Software Project Management
Databases and Data Retrieval
System Exploitation and Penetration Testing
Data Visualization
Software Security Assessment
Introduction to Systems Engineering Management
Memory and Cognition
High-Performance Scientific Computing
Human, Social & Organizational Factors in Emerging Technologies
Current Trends in Software Engineering
Research Methods for Engineers
Graduate Research Project
Dissertation Hours
Skills
Spoken Languages
- English (fluent)
Software Languages
- 8+ years in Java/JavaFX, C, Python, HTML, CSS and Markdown
- 7+ years in most common RDF serializations and corrolaries: OWL-XML, Turtle, TriG, SHACL, SWRL etc.
- 7+ years in most common data storage/query languages: XML, JSON, SQL, SPARQL, GeoSPARQL
- 2+ years in JavaScript, C# and Fortran
- 1 year use of Ruby/Rails, sqlite3, Devise and R
Software Libraries
- Java: all common libraries, JavaFX, Swing, multithreading, socketing, JDBC, Jackson, json-simple, JSoup, OwlAPI, Apache Jena, etc.
- Python: all common libraries, NumPy, Pandas, Numba, Numexpr, Cython, multiprocessing, mpi4py, Matplotlib, Seaborn, sklearn, NLTK, Chirp, RDFLib, SPARQLWrapper, etc.
Operating Systems
- Windows XP, Vista, 7, 8, 10 and 11
- Linux (Ubuntu distributions)
- Android OS
- Google Colab
- XigmaNAS
Remote Collaboration Apps
- Google Cloud products
- MS Teams
- Skype
- Slack
- Zoom
- Discord, Element, various other IRC services
Office Software
- All Microsoft products (Onedrive, Word, Excel, PowerPoint, OneNote, Outlook, Teams)
- All LibreOffice products (Writer, Calc, Impress, Draw)
- All Google products (Drive, Docs, Sheets, Slides)
- Mega
- Distributed tracked changes editing with large teams
Engineering Software
- Git/Github (desktop, web, command line), Jira, Bitbucket, Confluence
- Protégé, Stardog, TriplyDB, GraphDB, GraphViz, Ontotext Refine
- Eclipse IDE and Maven integration
- Visual Studio Code
- GoDaddy domain management, Heroku
- Trello and other Kanban platforms
- Google Cloud Platform (BigQuery, Speech to Text)
- MySQL (w/JDBC), PHPMyAdmin, PostgreSQL, PostGIS
- Passing familiarity with AWS databases
- QGIS
- Jupyter Notebook
- Concurrent C programming in VxWorks
Consistently-Used Vocabularies
- OWL, RDF, RDFS, SKOS, BFO, SUMO, UFO, GFO, Schema.org, WordNet, DCTerms, FOAF, PROV, GeoSPARQL, SPAR family, BIBO, SEON, SE-ON, MLSchema, ANNO, ANNETTO, OntoDM, IAO, CCO, DOLCE and many others
Design/Analysis Software
- Tableau, RStudio
- Kaggle
- Google SketchUp and AutoCAD LTE
- Wireframe software (Balsamiq, Mockingbird)
- Diagramming software (Draw.io, LucidChart, UML tools)
- Unity game engine with C# scripts
- Adobe products (Photoshop, Illustrator, After Effects)
Manuscript Formats
- 5+ years working with IEEE double column manuscripts
- 5+ years working with Elsevier-style single column manuscripts
AI Tools
- OpenAI's GPT series, including API work in Python
- Topaz Video AI
- Stable Diffusion WebUI, Midjourney
- CVAT
Relevant Literacy
Not including reviewed scientific literature
A Knowledge Representation Practionary, Michael K. Bergman
An Enquiry Concerning Human Understanding, David Hume
Practical Natural Language Processing, Vajjala et al.
Of Empire, Francis Bacon
Building Ontologies with BFO, Smith et al.
The Prince and Discourses on Livy, Niccolò Machiavelli
Dated Things
This section...
... is my attempt at documenting some of my very oldest achievements. They are not necessarily relevant now, but in the interest of completeness, I am including it all here.